
Publications by OMNI Members

Efficacy of a “stay-at-home” policy on SARS-CoV-2 transmission in Toronto, Canada: a mathematical modelling study
Pei Yuan, Juan Li, Elena Aruffo, Evgenia Gatov, Qi Li, Tingting Zheng, Nicholas H. Ogden, Beate Sander, Jane Heffernan, Sarah Collier, Yi Tan, Jun Li, Julien Arino, Jacques Bélair, James Watmough, Jude Dzevela Kong, Iain Moyles and Huaiping Zhu. April 19, 2022 10 (2) E367-E378.

Estimating social contacts in mass gatherings for disease outbreak prevention and management: case of Hajj pilgrimage
Tofighi, Mohammadali, Asgary, Ali, Tofighi, Ghassem, Najafabadi, Mahdi, Arino, Julien, Amiche, Amine, Rahman, Ashrafur, McCarthy, Zachary, Bragazzi, Nicola, Thommes, Edward, Coudeville, Laurent, Ghassemi, Abbas, Bourouiba, Lydia and Wu, Jianhong, 2021

Elena Aruffo, Pei Yuan, Yi Tan, Evgenia Gatov, Iain Moyles, Jacques Bélair, James Watmough, Sarah Collier, Julien Arino & Huaiping Zhu (2022)

Projections of the transmission of the Omicron variant for Toronto, Ontario, and Canada using surveillance data following recent changes in testing policies
Pei Yuan, Elena Aruffo, Yi Tan, Liu Yang, Nicholas H. Ogden, Aamir Fazil, Huaiping Zhu. In Infectious Disease Modelling (2022).

The origins and potential future of SARS-CoV-2 variants of concern in the evolving COVID-19 pandemic
Otto, S.P., Day, T., Arino, J., Colijn, C., Dushoff, J., Li, M., Mechai, S., Van Domselaar, G., Wu, J., Earn, D.J. and Ogden, N.H., In Current Biology, 2021.

SARS-CoV-2 in Nursing Homes: Analysis of Routine Surveillance Data in Four European Countries
Tristan Delory, Julien Arino, Paul-Emile Haÿ, Vincent Klotz, Pierre-Yves Boëlle (2023)
School and community reopening during the COVID-19 pandemic: a mathematical modelling study
Yuan Pei, Aruffo Elena, Gatov Evgenia, Tan Yi, Li Qi, Ogden Nick, Collier Sarah, Nasri Bouchra, Moyles Iain and Zhu Huaiping (2022).R. Soc. open sci.9211883211883

Exploring the Drivers of, and Potential Interventions to Reduce, Antimicrobial Resistance in the European Food System Context
Melanie Cousins (2022)

A simple in-host model for COVID-19 with treatments: model prediction and calibration
Isam Al-Darabsah, Kang-Ling Liao, Stéphanie Portet (2023).
Agent-based epidemiological modeling of COVID-19 in localized environments
P. Ciunkiewicz, W. Brooke, M. Rogers, S. Yanushkevich “An agent-based simulation framework for modeling COVID-19 spread in highly localized environments”. Computers in Biology and Medicine (2022)

A review of the evidence landscape to parameterize a One Health model of AMR in the Swedish food system context: Using expert knowledge in the interim?
Melanie Cousins (2022)

Downsizing of COVID-19 contact tracing in highly immune populations
Maria M. Martignoni, Josh Renault, Joseph Baafi, Amy Hurford (2022)

When host populations move north, but disease moves south: counter-intuitive impacts of climate warming on disease spread
E. Joe Moran, Maria Martignoni, Nicolas Lecomte. Patrick Leighton and Amy Hurford (2022).

Mapping out a One Health model in the context of the Swedish food system using a modified scoping review methodology: Scoping Review Database
Melanie Cousins (2022)

Suzan Farhang-Sardroodi, Mohammad Sajjad Ghaemi, Morgan Craig, Hsu Kiang Ooi, Jane M Heffernan (2022)

An environmental scan of one health preparedness and response: the case of the Covid-19 pandemic in Rwanda
Gloria Igihozo, Phaedra Henley, Arne Ruckert, Charles Karangwa, Richard Habimana, Rosine Manishimwe, Leandre Ishema, Hélène Carabin, Mary E. Wiktorowicz & Ronald Labonté (2022).

Using expert knowledge and experience to parameterize a simulation model of AMR emergence and transmission in a Swedish food system context: Framework Matrices
Melanie Cousins (2022)

Julien Arino, Evan Milliken (2022)

Beyond Zoonoses in One Health: Non-communicable Diseases Across the Animal Kingdom
B. Natterson-Horowitz, Marion Desmarchelier, Andrea Sylvia Winkler and Hélène Carabin (2022).

A One Health and fuzzy cognitive map-based approach to assess interventions to reduce antimicrobial resistance in a Swedish food system context under potential climate change conditions: Decision matrix and Scenario results
Melanie Cousins (2022)

COVID-19 virtual patient cohort suggests immune mechanisms driving disease outcomes
Adrianne L. Jenner, Rosemary A. Aogo, Sofia Alfonso, Vivienne Crowe, Xiaoyan Deng, Amanda P. Smith, Penelope A. Morel, Courtney L. Davis, Amber M. Smith, Morgan Craig (2021)

Epidemic Spreading in Trajectory Networks
Tilemachos Pechlivanoglou, Jing Li, Jialin Sun, Farzaneh Heidari, Manos Papagelis. Big Data Research, 27 (2022), 100275

Microscopic modeling of spatiotemporal epidemic dynamics
Tilemachos Pechlivanoglou, Gian Alix, Nina Yanin, Jing Li, Farzaneh Heidari, Manos Papagelis

Pei Yuan, Yi Tan, Liu Yang, Elena Aruffo, Nicholas H Ogden, Guojing Yang, Haixia Lu, Zhigui Lin, Weichuan Lin, Wenjun Ma, Meng Fan, Kaifa Wang, Jianhe Shen, Tianmu Chen, Huaiping Zhu (2022)

Erin E Rees, Brent P Avery, Hélène Carabin, Carolee A Carson, David Champredon, Simon de Montigny, Brendan Dougherty, Bouchra R Nasri, Nicholas H Ogden (2022).

A Mobility-based Recommendation System for Mitigating the Risk of Infection during Epidemics
Gian Alix, Nina Yanin, Tilemachos Pechlivanoglou, Jing Li, Farzaneh Heidari, Manos Papagelis

Modelling vaccination and control strategies of outbreaks of monkeypox at gatherings
Pei Yuan, Yi Tan, Liu Yang, Elena Aruffo, Nicholas H. Ogden, Jacques Bélair, Julien Arino, Jane Heffernan, James Watmough, Hélène Carabin, Huaiping Zhu (2022)

Risk of COVID-19 variant importation – How useful are travel control measures?
Arino, Julien, Boelle, Pierre-Yves, Milliken, Evan M and Portet, Stephanie. In Infectious Disease Modelling (2021).

When host populations move north, but disease moves south: counter-intuitive impacts of climate warming on disease spread
E. Joe Moran, Maria M. Martignoni, Nicolas Lecomte, Patrick Leighton, Amy Hurford (2022)

Pei Yuan, Yi Tan, Liu Yang, Elena Aruffo, Nicholas H. Ogden, Jacques Bélair, Jane Heffernan, Julien Arino, James Watmough, Hélène Carabin, Huaiping Zhu (2022)
*Additional publications to be added soon.