Publications by OMNI Members

Efficacy of a “stay-at-home” policy on SARS-CoV-2 transmission in Toronto, Canada: a mathematical modelling study

Pei Yuan, Juan Li, Elena Aruffo, Evgenia Gatov, Qi Li, Tingting Zheng, Nicholas H. Ogden, Beate Sander, Jane Heffernan, Sarah Collier, Yi Tan, Jun Li, Julien Arino, Jacques Bélair, James Watmough, Jude Dzevela Kong, Iain Moyles and Huaiping Zhu. April 19, 2022 10 (2) E367-E378.

Estimating social contacts in mass gatherings for disease outbreak prevention and management: case of Hajj pilgrimage

Tofighi, Mohammadali, Asgary, Ali, Tofighi, Ghassem, Najafabadi, Mahdi, Arino, Julien, Amiche, Amine, Rahman, Ashrafur, McCarthy, Zachary, Bragazzi, Nicola, Thommes, Edward, Coudeville, Laurent, Ghassemi, Abbas, Bourouiba, Lydia and Wu, Jianhong, 2021

Mathematical modelling of vaccination rollout and NPIs lifting on COVID-19 transmission with VOC: a case study in Toronto, Canada

Elena Aruffo, Pei Yuan, Yi Tan, Evgenia Gatov, Iain Moyles, Jacques Bélair, James Watmough, Sarah Collier, Julien Arino & Huaiping Zhu (2022)

Projections of the transmission of the Omicron variant for Toronto, Ontario, and Canada using surveillance data following recent changes in testing policies

Pei Yuan, Elena Aruffo, Yi Tan, Liu Yang, Nicholas H. Ogden, Aamir Fazil, Huaiping Zhu. In Infectious Disease Modelling (2022).

The origins and potential future of SARS-CoV-2 variants of concern in the evolving COVID-19 pandemic

Otto, S.P., Day, T., Arino, J., Colijn, C., Dushoff, J., Li, M., Mechai, S., Van Domselaar, G., Wu, J., Earn, D.J. and Ogden, N.H., In Current Biology, 2021.

SARS-CoV-2 in Nursing Homes: Analysis of Routine Surveillance Data in Four European Countries

Tristan Delory, Julien Arino, Paul-Emile Haÿ, Vincent Klotz, Pierre-Yves Boëlle (2023)

School and community reopening during the COVID-19 pandemic: a mathematical modelling study

Yuan Pei, Aruffo Elena, Gatov Evgenia, Tan Yi, Li Qi, Ogden Nick, Collier Sarah, Nasri Bouchra, Moyles Iain and Zhu Huaiping (2022).R. Soc. open sci.9211883211883

A simple in-host model for COVID-19 with treatments: model prediction and calibration

Isam Al-Darabsah, Kang-Ling Liao, Stéphanie Portet (2023).

Agent-based epidemiological modeling of COVID-19 in localized environments

P. Ciunkiewicz, W. Brooke, M. Rogers, S. Yanushkevich “An agent-based simulation framework for modeling COVID-19 spread in highly localized environments”. Computers in Biology and Medicine (2022)

Downsizing of COVID-19 contact tracing in highly immune populations

Maria M. Martignoni, Josh Renault, Joseph Baafi, Amy Hurford (2022)

Beyond Zoonoses in One Health: Non-communicable Diseases Across the Animal Kingdom

B. Natterson-Horowitz, Marion Desmarchelier, Andrea Sylvia Winkler and Hélène Carabin (2022).

COVID-19 virtual patient cohort suggests immune mechanisms driving disease outcomes

Adrianne L. Jenner, Rosemary A. Aogo, Sofia Alfonso, Vivienne Crowe, Xiaoyan Deng, Amanda P. Smith, Penelope A. Morel, Courtney L. Davis, Amber M. Smith, Morgan Craig (2021)

Epidemic Spreading in Trajectory Networks

Tilemachos Pechlivanoglou, Jing Li, Jialin Sun, Farzaneh Heidari, Manos Papagelis. Big Data Research, 27 (2022), 100275

Microscopic modeling of spatiotemporal epidemic dynamics

Tilemachos Pechlivanoglou, Gian Alix, Nina Yanin, Jing Li, Farzaneh Heidari, Manos Papagelis

Assessing the mechanism of citywide test-trace-isolate Zero-COVID policy and exit strategy of the COVID-19 pandemic

Pei Yuan, Yi Tan, Liu Yang, Elena Aruffo, Nicholas H Ogden, Guojing Yang, Haixia Lu, Zhigui Lin, Weichuan Lin, Wenjun Ma, Meng Fan, Kaifa Wang, Jianhe Shen, Tianmu Chen, Huaiping Zhu (2022)

Effectiveness of non-pharmaceutical interventions to reduce SARS-CoV-2 transmission in Canada and their association with COVID-19 hospitalisation rates

Erin E Rees, Brent P Avery, Hélène Carabin, Carolee A Carson, David Champredon, Simon de Montigny, Brendan Dougherty, Bouchra R Nasri, Nicholas H Ogden (2022).

A Mobility-based Recommendation System for Mitigating the Risk of Infection during Epidemics

Gian Alix, Nina Yanin, Tilemachos Pechlivanoglou, Jing Li, Farzaneh Heidari, Manos Papagelis

Modelling vaccination and control strategies of outbreaks of monkeypox at gatherings

Pei Yuan, Yi Tan, Liu Yang, Elena Aruffo, Nicholas H. Ogden, Jacques Bélair, Julien Arino, Jane Heffernan, James Watmough, Hélène Carabin, Huaiping Zhu (2022)

Risk of COVID-19 variant importation – How useful are travel control measures?

Arino, Julien, Boelle, Pierre-Yves, Milliken, Evan M and Portet, Stephanie. In Infectious Disease Modelling (2021).

When host populations move north, but disease moves south: counter-intuitive impacts of climate warming on disease spread

E. Joe Moran, Maria M. Martignoni, Nicolas Lecomte, Patrick Leighton, Amy Hurford (2022)

Assessing transmission risks and control strategy for monkeypox as an emerging zoonosis in a metropolitan area

Pei Yuan, Yi Tan, Liu Yang, Elena Aruffo, Nicholas H. Ogden, Jacques Bélair, Jane Heffernan, Julien Arino, James Watmough, Hélène Carabin, Huaiping Zhu (2022)

*Additional publications to be added soon.